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.cel fiels
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Guidance to handle .CEL file in R
R
.cel fiels
microarray
mouse4302
5.8 years ago
aacharya
• 0
0
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3
replies
1.3k
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content of cel file
.cel fiels
updated 7.2 years ago by
cstrato
★ 3.9k • written 7.2 years ago by
farahqureshi5
• 0
0
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3
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2.4k
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view .CEL file- in both windows and ubuntu
cel
.cel fiels
7.2 years ago
farahqureshi5
• 0
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1
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675
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How to extract .CEL files from .DTTfile/archive
microarray
.CEL fiels
.DTT
tools
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
renugene
• 0
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Comment: Can I trust the differential expression analysis when the two groups overlap on
by
Eric Katagirya
• 0
I created a DESeqDataSet object using DESeqDataSetFromMatrix function. I don't anticipate any mismatching or mixup of sampleIDs.
Answer: Assymetric MA plot with no overall trend
by
Michael Love
42k
> so many upregulated genes vs. downregulated, which I think is worrying Take a look at the plotCounts for a couple of the up-regulated …
Comment: Can I trust the differential expression analysis when the two groups overlap on
by
Michael Love
42k
I'm wondering about sample table mixup. How have you merged your sequencing data with the phenotype data (`colData`)?
Comment: Can I trust the differential expression analysis when the two groups overlap on
by
Eric Katagirya
• 0
Thanks @mikelove , Using vst or rlog doesn't improve the segregation nor is there a remarkable difference when I use 1000 or 2000 most vari…
Answer: Batch effect correction: methylome data
by
zhouwanding
▴ 10
I agree that the batch variable should be better modeled as a co-variate than explicit batch correction. There is also RUVm (https://www.nc…
Votes
Ensembl 112 has been released.
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
Comment: Store output of matchPWM()
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